Title:
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Efficient space and time multicomparison of genomes
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Author:
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Messeguer Peypoch, Xavier; Huerta, Mario
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Other authors:
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Universitat Politècnica de Catalunya. Departament de Ciències de la Computació |
Abstract:
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The comparison of genomes is based on substrings, called MUMs, that appear only once in each genome and are maximal. The set of MUMs determines the skeleton from which a global comparison can be established. The search of MUMs is handled with Suffix trees which are those trees that store all suffixes of a given sequence. The searching algorithm builds a generalized suffixtree for each pair and finds the MUMs between them. |
Subject(s):
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-Àrees temàtiques de la UPC::Informàtica -Genomes comparison -MuMs -Suffix trees -Pattern matching |
Rights:
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Document type:
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Article - Published version Report |
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