Constructed wetlands are a popular form of waste-water treatment that have proliferated across Europe and the rest of the world in recent years as an environmentally conscious form of waste water treatment. The ability to monitor the conditions in the bed and control input factors such as heating and aeration may extend the lifetime of the reed bed substantially beyond the ten year lifetime normally reached. The Autonomous Reed Bed Installation (ARBI) project is an EU FP7 initiative to develop a reed bed with automated control over input parameters based on readings taken from embedded sensors. Automated remedial action may improve bed treatment efficiency, and prolong the life of the bed and avoiding the need to refurbish the bed, which is both time consuming and costly. One critical parameter to observe is the clog state of the reed bed, as this can severely impact on the efficiency of water treatment to the point of the bed becoming non-operable. Magnetic resonance (MR) sensors can be a powerful tool in determining clogging levels, and has previously been explored in the literature. This work is based on a conference paper (2nd International Conference