The concept of measure synchronization between two coupled quantum many-body systems is presented. In general terms we consider two quantum many-body systems whose dynamics gets coupled through the contact particle-particle interaction. This coupling is shown to produce measure synchronization, a generalization of synchrony to a large class of systems which takes place in absence of dissipation. We find that in quantum measure synchronization, the many-body quantum properties for the two subsystems, e.g., condensed fractions and particle fluctuations, behave in a coordinated way. To illustrate the concept we consider a simple case of two species of bosons occupying two distinct quantum states. Measure synchronization can be readily explored with state-of-the-art techniques in ultracold atomic gases and, if properly controlled, be employed to build targeted quantum correlations in a sympathetic way.