The high proportion of acetonitrile used in many HILIC mobile phases significantly changes the acid-base properties of pH buffers and analytes foreseen from available data in water. In this paper, the recommended stability pH range for chromatographic columns is examined with various acetonitrile water mixtures, resulting in a significant broadening in the operational pH window with the content of organic solvent. Additionally, the challenge of buffer selection in HILIC is also addressed. Commonly used ammonium acetate shrinks its pH buffering range in acetonitrile-rich mobile phases due to variations in the dissociation constants of the buffer constituents (acetic acid and ammonium). Thus, other organic acids such as formic acid, TFA, and succinimide have been studied as buffers in order to fully cover the pH range of use of the column. Also the retention-pH profiles of several acids and bases have been studied in 80% and 90% acetonitrile using the proposed buffers and their behavior compared to that obtained with buffers prepared from oxalic acid, pyrrolidine, and triethylamine. The latter two show additional interactions in 80% acetonitrile that distort the expected retention-pH profiles of acid analytes, but not the ones of bases. In 90% acetonitrile the profiles are affected by significant additional solute-buffer interactions that might be caused by ion pairing, homo- and heteroassociation in this low ion solvating medium.