A Bayesian analysis of the effect of selection for growth rate on growth curves in rabbits 

    Blasco, Agustín; Piles, Miriam; Varona Aguado, Luis (2003-01-15)

    Gompertz growth curves were fitted to the data of 137 rabbits from control (C) and selected (S) lines. The animals came from a synthetic rabbit line selected for an increased growth rate. The embryos from generations 3 ...

    A bi-dimensional genome scan for prolificacy traits in pigs shows the existence of multiple epistatic QTL 

    Noguera, José Luis; Rodríguez, Carmen; Varona Aguado, Luis; Tomàs, Anna; Muñoz, Gloria; Ramírez, Oscar; Barragán, Carmen; Arqué, Meritxell; Bidanel, Jean P; Amills, Marcel; Ovilo, Cristina; Sánchez, Armand (2009-12-29)

    Background: Prolificacy is the most important trait influencing the reproductive efficiency of pig production systems. The low heritability and sex-limited expression of prolificacy have hindered to some extent the ...

    A consensus linkage map for molecular markers and Quantitative Trait Loci associated with economically important traits in melon (Cucumis melo L.) 

    Diaz, Aurora; Fergany, Mohamed; Formisano, Gelsomina; Ziarsolo, Peio; Blanca, José; Fei, Zhanjun; Staub, Jack E.; Zalapa, Juan E.; Cuevas, Hugo E.; Dace, Gayle; Oliver, Marc; Boissot, Nathalie; Dogimont, Catherine; Pitrat, Michel; Hofstede, René; van Koert, Paul; Harel-Beja, Rotem; Tzuri, Galil; Portnoy, Vitaly; Cohen, Shahar; Schaffer, Arthur; Katzir, Nurit; Xu, Yong; Zhang, Haiying; Fukino, Nobuko; Matsumoto, Satoru; Garcia-Mas, Jordi; Monforte, Antonio J. (2011-07-28)

    Background: A number of molecular marker linkage maps have been developed for melon (Cucumis melo L.) over the last two decades. However, these maps were constructed using different marker sets, thus, making comparative ...

    A genome-wide association analysis for porcine serum lipid traits reveals the existence of age-specific genetic determinants 

    Manunza, Arianna; Casellas, Joaquim; Quintanilla, Raquel; González-Prendes, Rayner; Pena, Ramona N; Tibau , Joan; Mercadé, Anna; Castelló, Anna; Aznárez, Nitdia; Hernández-Sánchez, Jules; Amills, Marcel (2014-09-04)

    Background: The genetic determinism of blood lipid concentrations, the main risk factor for atherosclerosis, is practically unknown in species other than human and mouse. Even in model organisms, little is known about how ...

    A set of EST-SNPs for map saturation and cultivar identification in melon 

    Deleu, Wim; Esteras, Cristina; Roig, Cristina; González-To, Mireia; Fernández-Silva, Iria; Gonzalez-Ibeas, Daniel; Blanca, José; Aranda, Miguel A; Arús, Pere; Nuez, Fernando; MONFORTE, Antonio José; Picó, Maria Belén; Garcia-Mas, Jordi (2009-07-15)

    Background: There are few genomic tools available in melon (Cucumis melo L.), a member of the Cucurbitaceae, despite its importance as a crop. Among these tools, genetic maps have been constructed mainly using marker types ...

    Almond population genomics and non-additive GWAS reveal new insights into almond dissemination history and candidate genes for nut traits and blooming time 

    Pérez de los Cobos, Felipe; Coindre, Eva; Dlalah, Naïma; Quilot-Turion, Bénédicte; Batlle, Ignasi; Arús, Pere; Eduardo, Iban; Duval, Henri (2023-09-25)

    Domestication drastically changed crop genomes, fixing alleles of interest and creating different genetic populations. Genome-wide association studies (GWASs) are a powerful tool to detect these alleles of interest (and ...

    An association analysis between a polymorphism in the SEC24A gene and lipid traits recorded in Duroc pigs 

    Mármol-Sánchez, Emilio; Quintanilla, Raquel; Luigi-Sierra, María Gracia; Amills, Marcel (2021-10-05)

    By regulating the expression of low-density lipoprotein receptors (LDLR), the SEC24A protein modulates the clearance of plasma cholesterol in mice. The whole-genome sequencing of five Duroc boars that sired a Duroc purebred ...

    An oligo-based microarray offers novel transcriptomic approaches for the analysis of pathogen resistance and fruit quality traits in melon (Cucumis melo L.) 

    Mascarell-Creus, Albert; Cañizares, Joaquin; Vilarrasa-Blasi, Josep; Mora-García, Santiago; Blanca, José; Gonzalez-Ibeas, Daniel; Saladié, Montserrat; Roig, Cristina; Deleu, Wim; Picó-Silvent, Belén; López-Bigas, Nuria; Aranda, Miguel A; Garcia-Mas, Jordi; Nuez, Fernando; Puigdomènech, Pere; Caño-Delgado, Ana I (2009-10-12)

    Background: Melon (Cucumis melo) is a horticultural specie of significant nutritional value, which belongs to the Cucurbitaceae family, whose economic importance is second only to the Solanaceae. Its small genome of ...

    Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon 

    Clepet, Christian; Joobeur, Tarek; Zheng, Yi; Jublot, Delphine; Huang, Mingyun; Truniger, Veronica; Boualem, Adnane; Hernandez-Gonzalez, Maria Elena; Dolcet-Sanjuan, Ramon; Portnoy, Vitaly; Mascarell-Creus, Albert; Caño-Delgado, Ana I.; Katzir, Nurit; Bendahmane, Abdelhafid; Giovannoni, James J.; Aranda, Miguel A.; Garcia-Mas, Jordi; Fei, Zhangjun (2011-05-20)

    Background: Melon (Cucumis melo), an economically important vegetable crop, belongs to the Cucurbitaceae family which includes several other important crops such as watermelon, cucumber, and pumpkin. It has served as a ...

    Analysis of porcine MUC4 gene as a candidate gene for prolificacy QTL on SSC13 in an Iberian × Meishan F2 population 

    Balcells, Ingrid; Castelló, Anna; Mercadé, Anna; Noguera, José Luis; Fernández-Rodríguez, Amanda; Sànchez, Armand; Tomàs, Anna (2011-10-31)

    Background: Reproductive traits, such as prolificacy, are of great interest to the pig industry. Better understanding of their genetic architecture should help to increase the efficiency of pig productivity through the ...

    Analysis of the melon (Cucumis melo) small RNAome by high-throughput pyrosequencing 

    Gonzalez-Ibeas, Daniel; Blanca, José; Donaire, Livia; Saladié, Montserrat; Mascarell-Creus, Albert; Cano-Delgado, Ana; Garcia-Mas, Jordi; Llave, Cesar; Aranda, Miguel A. (2011-08-03)

    Background: Melon (Cucumis melo L.) is a commercially important fruit crop that is cultivated worldwide. The melon research community has recently benefited from the determination of a complete draft genome sequence and ...

    Annotated 18S and 28S rDNA reference sequences of taxa in the planktonic diatom family Chaetocerotaceae 

    Gaonkar, Chetan C.; Piredda, Roberta; Minucci, Carmen; Mann, David G.; Montresor, Marina; Sarno, Diana; Kooistra, Wiebe H. C. F. (2018-12-26)

    The species-rich diatom family Chaetocerotaceae is common in the coastal marine phytoplankton worldwide where it is responsible for a substantial part of the primary production. Despite its relevance for the global cycling ...

    ASSIsT: an automatic SNP scoring tool for in- and outbreeding species 

    Di Guardo, Mario; Micheletti, Diego; Bianco, Luca; Koehorst-van Putten, Herma J. J.; Longhi, Sara; Costa, Fabrizio; Aranzana, Maria Jose; Velasco, Riccardo; Arús, Pere; Troggio, Michela; van de Weg, Eric W. (2015-08-06)

    ASSIsT (Automatic SNP ScorIng Tool) is a user-friendly customized pipeline for efficient calling and filtering of SNPs from Illumina Infinium arrays, specifically devised for custom genotyping arrays. Illumina has developed ...

    Behaviour influences cholesterol plasma levels in a pig model 

    Rauw, W. M.; Portolés, O.; Corella, D.; Soler, Joaquim; Reixach, J.; Tibau , Joan; Prat, J. M.; Díaz, Isabel; Gómez-Raya, L. (2007-07)

    Little is known about the relationship between feed intake behaviour and cholesterol levels in humans. This can be attributed to the fact that feed intake behaviour in humans is difficult to assess. The relationships ...

    Comparative analysis of rosaceous genomes and the reconstruction of a putative ancestral genome for the family 

    Illa, Eudald; Sargent, Daniel J.; Lopez Girona, Elena; Bushakra, Jill; Cestaro, Alessandro; Crowhurst, Ross; Pindo, Massimo; Cabrera, Antonio; van der Knaap, Esther; Iezzoni, Amy; Gardiner, Susan; Velasco, Riccardo; Arús, Pere; Chagné, David; Troggio, Michela (2011-01-12)

    Background: Comparative genome mapping studies in Rosaceae have been conducted until now by aligning genetic maps within the same genus, or closely related genera and using a limited number of common markers. The growing ...

    Competing risk analyses of longevity in Duroc sows with a special emphasis on leg conformation 

    Fernández de Sevilla, X.; Fàbrega-Romans, Emma; Tibau , Joan; Casellas, Joaquim (2009-01-01)

    A competing risk approach was used to evaluate the influence of several factors on culling risk for 587 Duroc sows. Three different analyses were performed according to whether sow failure was due to death during productive ...

    Construction of an almond linkage map in an Australian population Nonpareil × Lauranne 

    Tavassolian, Iraj; Rabiei, Gholmereza; Gregory, Davina; Mnejja, Mourad; Wirthensohn, Michelle G; Hunt, Peter W; Gibson, John P; Ford, Christopher M; Sedgley, Margaret; Wu, Shu-Biao (2010-10-09)

    Background: Despite a high genetic similarity to peach, almonds (Prunus dulcis) have a fleshless fruit and edible kernel, produced as a crop for human consumption. While the release of peach genome v1.0 provides an ...

    Copy number variation in the porcine genome inferred from a 60 k SNP BeadChip 

    Ramayo-Caldas, Yuliaxis; Castelló, Anna; Pena, Romi; Alves, Estefania; Mercadé, Anna; Souza, Carla A; Fernández, Ana I; Perez-Enciso, Miguel; Folch, Josep M (2010-10-22)

    Background: Recent studies in pigs have detected copy number variants (CNVs) using the Comparative Genomic Hybridization technique in arrays designed to cover specific porcine chromosomes. The goal of this study was ...

    Crossbreeding effects on pig growth and carcass traits from two Iberian strains 

    Ibanez-Escriche, Noelia; Varona, L.; Magallón, E.; Noguera, José Luis (2014-07-14)

    An experiment of a 2 × 2 full diallelic cross between two contemporary Iberian pig strains (Retinto: RR, and Torbiscal: TT) was conducted to estimate the crossbreeding effects for growth and carcass traits. Phenotypic ...

    Determination of the melon chloroplast and mitochondrial genome sequences reveals that the largest reported mitochondrial genome in plants contains a significant amount of DNA having a nuclear origin 

    Rodríguez-Moreno, Luis; González, Víctor M.; Benjak, Andrej; Martí, M. Carmen; Puigdomènech, Pere; Aranda, Miguel A.; Garcia-Mas, Jordi (2011-08-20)

    Background: The melon belongs to the Cucurbitaceae family, whose economic importance among vegetable crops is second only to Solanaceae. The melon has a small genome size (454 Mb), which makes it suitable for molecular ...